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Carpentries Incubator Pre-Alpha This lesson is in the pre-alpha phase, which means that it is in early development, but has not yet been taught.

Carpentries Incubator
HPC Workflow Management with Snakemake
  • HPC Workflow Management with Snakemake
  • Key Points
  • Glossary
  • Learner Profiles
    • Reference
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HPC Workflow Management with Snakemake
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Instructor View

Summary and Setup
1. Running commands with Snakemake
2. Running Snakemake on the cluster
3. Placeholders
4. MPI applications and Snakemake
5. Chaining rules
6. Processing lists of inputs

  • Key Points
  • Glossary
  • Learner Profiles
  • Reference

See all in one page

Running commands with Snakemake


Running Snakemake on the cluster


Placeholders


MPI applications and Snakemake


Chaining rules


Processing lists of inputs



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